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  • Antidepressant treatment with fluoxetine during pregnancy and lactation modulates the gut microbiome and metabolome in a rat model relevant to depression
    UMB Dataset

    Authors
    Anouschka S. Ramsteijn
    Eldin Jašarević
    Danielle J. Houwing
    Tracy L. Bale
    1 more author(s)...
    Description

    Data and figures are provided on the effects of fluoxetine, a selective serotin reuptake inhibitor (SSRI) antidepressant, on the gut microbiome and metabolome in a rat model to better understand the effect of this drug on women during gestation and lactation. Throughout pregnancy and lactation, female rats received the SSRI fluoxetine or vehicle. High resolution 16S ribosomal RNA marker gene sequencing and targeted metabolic analysis were used to assess the fecal microbiome and metabolic availability, respectively.

    Subject
    Antidepressive Agents
    Lactation
    Pregnancy
    Geographic Coverage
    Netherlands
    Access Rights
    Free to all
  • Deep dissection of the antiviral immune profile of patients with COVID-19
    UMB Dataset

    Authors
    Djordje Atanackovic
    Stephanie V. Avila
    Forat Lutfi
    Diego de Miguel-Perez
    16 more author(s)...
    Description

    This dataset collected 40 ml of heparinized blood from 20 COVID-19 patients who were admitted to the University of Maryland Medical Center between June and August of 2020. Plasma samples were collected at a median of 10 or 7 days, dependent on the patient's risk group. Samples were analyzed using full-length recombinant protein in an enzyme-linked immunosorbent assay (ELISA). Antibodies were screened against 9 different SARS-CoV-2 proteins. Responses were observed against the spike (S) proteins, the receptor-binding domain (RBD), and the nucleocapsid (N) protein which were of the IgG1 and IgG3 subtypes. Studies using this dataset aim to identify the most relevant component of the anti-SARS-CoV-2 humoral immune response and enable researchers to design more meaningful immunomonitoring methods for anti-COVID19 vaccines.

    Subject
    Antibodies, Neutralizing/immunology
    Antibodies, Viral/immunology
    COVID-19/immunology
    Viral Proteins/immunology
    Geographic Coverage
    Baltimore (Md.)
    Timeframe
    2020
    Access Rights
    Free to all
  • mRNA booster vaccination protects aged mice against the SARS-CoV-2 Omicron variant
    UMB Dataset

    Authors
    Etsuro Nanishi
    Marisa E. McGrath
    Timothy R. O’Meara
    Soumik Barman
    17 more author(s)...
    Description

    This study investigates multiple vaccine strategies to enhance immunogenicity and protection against SARS-CoV-2 in aged mice. The study aims to determine the effect of a booster dose, with an emphasis on older age. Female three and eleven-month-old BALB/c mice were studied over the course of 38 weeks. Mice received BNT162b2 SARS-CoV-2 spike mRNA vaccine series, primary vaccination series, and mock Phosphate-buffered saline (PBS) injections. Single mouse experiments aimed to include 20 mice per group. Sample size and age criteria were chosen empirically based on the results of previous studies. Mice were randomly assigned to different treatment groups.

    Subject
    COVID-19/prevention & control
    Viral Vaccines/genetics
    Access Rights
    Free to all
    Local Experts
    Matthew B. Frieman
  • University of Maryland Medicine Biorepository
    UMB Dataset

    Alternate Title(s)
    UMM Biorepository, University of Maryland Genetics BIObank
    Description

    The UMM Biorepository is a resource building effort that includes banking of blood samples from UMMS patients as well as collections of various biospecimens from collaborating UM researchers. State-of-the-art robotic freezer and liquidhandling equipment offer a secure and managed environment for biospecimen processing, storage and distribution. Data connected to the samples is obtained through the electronic health record and/or study-specific data collection, allowing for multi-disciplinary research that can impact a range of health issues. Access to data and biospecimens is dependent upon specific study requirements.

    Subject
    Biological Specimen Banks
    Access Rights
    Approval required
    University of Maryland personnel only
    Local Experts
    Alan R. Shuldiner
    Coleen M. Damcott
  • Rwanda Demographic Health Surveys

    Alternate Title(s)
    RDHS
    Description

    Rwanda Demographic Health Surveys, part of the USAID Demographic Health Surveys Program, provide reliable estimates of fertility levels, marriage, sexual activity, fertility preferences, family planning methods, breastfeeding practices, nutrition, childhood and maternal mortality, maternal and child health, early childhood development, malaria, domestic violence, and HIV/AIDS and other STIs. The information collected is intended to assist policymakers and program managers in evaluating and designing programs and strategies for improving the health of the country’s population. The Demographic and Health Survey has been conducted in Rwanda for the following years: 1992, 2000, 2005, 2010, 2014-15, and 2019-20.

    Subject
    Health Surveys
    Population Characteristics
    Geographic Coverage
    Rwanda
    Access Rights
    Registration required
    Local Experts
    David J. Riedel
  • Cocaine-induced neuron subtype mitochondrial dynamics through Egr3 transcriptional regulation
    UMB Dataset

    Authors
    Shannon L. Cole
    Ramesh Chandra
    Maya Harris
    Ishan Patel
    8 more author(s)...
    Description

    This dataset was generated to investigate long-lasting neurobiological adaptations to drugs of abuse. This dataset specifically supported the study of cocaine exposure impact of mitochondrial dynamics and morphology through early growth response factor 3 (Egr3) transcriptional regulation of mitochondria-related nuclear gene transcripts. Mitochondria-related nuclear genes were assayed following contingent or non-contingent cocaine exposure in rodents and were also examined in postmortem nucleus accumbens (NAc) of cocaine dependents.

    Supplemental data in tabular forms include human demographics, DNA sequencing primers, mitochondrial statistical analysis, and gene regulations.

    The following data elements were observed over a period of 7-10 days: Egr3 change in response to cocaine vs saline between rats and human postmortem issue; Egr3 binding changes in various genes promoting mitochondria in response to cocaine vs saline between rats and human postmortem issue; mRNA change in response to cocaine and saline between rats and human postmortem issue and between cocaine addict and control group; mRNA change in response to cocaine and saline between rats and human dead issue; Ribosome (the RNA binding proteins) associated mRNA changes in dopamine receptor-1 containing medium spiny neurons (D1 MSNs) and D2 MSNs in response to cocaine and saline between cocaine addict and control group.

    Subject
    Cocaine/pharmacology
    Early Growth Response Protein 3
    Mitochondrial Dynamics
    Neurons
    Transcription, Genetic/drug effects
    Access Rights
    Unrestricted access
    Approval required
  • National Health and Nutrition Examination Survey (NHANES)

    Alternate Title(s)
    NHANES
    Description

    The National Health and Nutrition Examination Survey (NHANES) is a program of studies designed to assess the health and nutritional status of adults and children in the United States. Participants are selected via a random sampling method. The survey is unique in that it combines interviews and physical examinations. The NHANES interview includes demographic, socioeconomic, dietary, and health-related questions. The examination component consists of medical, dental, and physiological measurements, as well as laboratory tests administered by highly trained medical personnel.

    Subject
    Health Status Indicators
    Population Health
    Geographic Coverage
    United States
    Access Rights
    Free to all
    Local Experts
    Alan R. Shuldiner
    Braxton C. Mitchell
    Gulam Muhammed Al Kibria
    Marc C. Hochberg
    Michael Miller
    Michelle D. Shardell
    Odessa R. Addison
    Rebecca M. Brotman
    Reese Crispen
    Samer S. El-Kamary
    Yan Wang
  • Health Outcomes and Measures of the Environment (HOME)

    Alternate Title(s)
    HOME
    Description

    The Health Outcomes and Measures of the Environment (HOME) Study, a prospective pregnancy and birth cohort in the greater Cincinnati OH metropolitan area, was established to determine whether early life environmental chemical exposures influence children’s health. Data include longitudinal and repeated measures of chemical exposures and child health beginning in the gestational age of 16.0 weeks with follow ups until 8 years of age. This includes 100+ environmental chemical exposures measured in women and children, as well as repeated measures of child neurodevelopment, anthropometry, respiratory and allergy outcomes, and injuries.

    Subject
    Child Health
    Environmental Exposure
    Geographic Coverage
    Ohio
    Access Rights
    Approval required
    Local Experts
    Adam Spanier
    Erika Friedmann
    Robyn Gilden