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  • Human Disease Ontology Project
    UMB Dataset

    Authors
    Lynn M. Schriml (Principal Investigator)
    Description

    Human Disease Ontology (DO) Project release files. The DO project actively collaborates with biomedical and clinical researchers and data repositories to coordinate a standardized classification of human disease. The DO's GitHub repository includes the monthly releases (https://tinyurl.com/DiseaseOntologyReleases), of OWL, OBO, JSON and XML formatted files along with DO subsets (ontology slims) for the Alliance of Genome Resouces, FlyBase, Mouse Genome Informatics Database, the Immune Epitope Database, DO_Cancer_slim (for cancer variant resources), and zoonotic infectious diseases.The DO SPARQL GitHub directory provides a suite (https://tinyurl.com/DiseaseOntologySrcSparql) of data reporting and QC queries for the community to explore DO's data. File formats include OWL, OBO, JSON, and XML. User requests for disease term review or inclusion of new disease terms may be submitted via the DO GitHub tracker: https://github.com/DiseaseOntology/HumanDiseaseOntology/issues.

    Subject
    Bioinformatics
    Biological Ontologies
    Classification
    Access Rights
    Free to All, CCO Licence
  • Staphylococcus aureus strain MRSA1, whole genome shotgun sequencing project
    UMB Dataset

    Alternate Title(s)
    Examination of 388 Staphylococcus aureus Isolates from Intensive Care Unit Patients
    Authors
    Timileyin Adedrian
    Stephanie Hitchcock
    Lyndsay M. O’Hara
    Jane M. Michalski
    6 more author(s)...
    Description

    The dataset contains data pertaining to the examination of draft genomes of 388 methicillin-resistant Staphylococcus aureus isolates obtained from intensive care unit patients at three geographically distributed hospitals. The purpose of the study was to determine genomic diversity associated with potential health care worker-associated transmission. Relevant statistics, including linked GenBank and SRA accession numbers for each genome assembly, are included in Table 1 of the associated publication.

    Subject
    Disease Transmission, Infectious
    Intensive Care Units
    Methicillin-Resistant Staphylococcus aureus
    Whole Genome Sequencing
    Geographic Coverage
    California
    Maryland
    New York (State)
    Access Rights
    Free to All
  • Heroin in Transition Study (HIT)
    UMB Dataset

    Authors
    Daniel Ciccarone
    George J. Unick
    Jenny K. Cohen
    Sarah G. Mars
    1 more author(s)...
    Description

    Dataset comprises hospitalization rates for opioid injection-related skin and soft-tissue infections (O-SSTI) correlated with changes in the price and purity of heroin for the years 1993 through 2010, inclusive. Data is derived from the Healthcare Cost and Utilization Project (HCUP) Nationwide Inpatient Sample (NIS) and the Drug Enforcement Administration (DEA) System to Retrieve Information from Drug Evidence (STRIDE) databases for 27 Metropolitan Statistical Areas (MSAs).

    Subject
    Substance-Related Disorders
    Geographic Coverage
    United States